Boldly going where nobody's gone before. In a lot of ways, that idea kind of defines our whole species. We travel. We're curious. We poke our noses around the planet to find new places to live. We're compelled to explore places few people would ever actually want to live. We push ourselves into space.
This behavior isn't totally unique. But it is remarkable. So we have to ask, is there a genetic, evolution-driven, cause behind the restlessness of humanity?
At National Geographic, David Dobbs has an amazing long read digging into that idea. The story is fascinating, stretching from Polynesian sailors to Quebecois settlers. And it's very, very good science writing. Dobbs resists the urge to go for easy "here is the gene that does this" answers. Instead, he helps us see the complex web of genetics and culture that influences and encourages certain behaviors at certain times. It's a great read.
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Not all of us ache to ride a rocket or sail the infinite sea. Yet as a species we’re curious enough, and intrigued enough by the prospect, to help pay for the trip and cheer at the voyagers’ return. Yes, we explore to find a better place to live or acquire a larger territory or make a fortune. But we also explore simply to discover what’s there.
“No other mammal moves around like we do,” says Svante Pääbo, a director of the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany, where he uses genetics to study human origins.
When scientists from the Leibniz Institute of Plant Genetics and Crop Plant Research in Germany sequenced the genome of barley, they were thinking primarily about the impact on food. Understanding the genetics behind certain traits could help us breed barley varieties that have built-in resistance against disease, or that contain more fiber. (Contrary to popular understanding, there's actually a lot of overlap between what we might think of as genetic engineering and what we might think of as breeding. Crop researchers can use genome maps to select specific plants to cross pollinate, enabling them to reliably breed a trait into a new variety much faster than was previously possible.)
But, this is barley. And we don't just eat barley. With this plant, sequencing the genome also has implications for the way we brew beer. At Popular Science, Martha Harbison explains what we're learning about barley's genetic code and why it matters in beer making. In particular, she says it's significant that the researchers sequenced the genomes of more than one variety of barley.
Why should aspiring homebrewers care? Because two-row and six-row barley behave slightly differently in the mash, which can have profound effects on brewing efficiency and characteristics of the finished beer (a complex phenomenon I'll get into in a future column). I figured anyone nerdulent enough to want to know about genetic differences of cultivars would be curious as to which kind of barley was used in the single-nucleotide-variation study.
The cost of genome sequencing is starting to sink into the affordable range. (In comparison to its previous cost. We're talking "within reach" the same way Design Within Reach uses the phrase.)
Companies are starting to claim that a $1000 personal genome sequence is on the horizon. But what does that mean for you? Should you save up and get one? Can it really tell you anything meaningful at all? Who is going to sift through all the information your genome represents — and how will they do it?
Tonight, starting at 7:00 Eastern, Science Online New York City is hosting a round-table to discuss these issues, especially the problems associated with collecting, making sense of, and protecting a massive new stream of personal data. The live event is sold out, but you can watch whole thing streaming online.
Panelists: Ronald Crystal, the Chairman of the Department of Genetic Medicine at Weill-Cornell Medical College, who has had his genome sequenced and analyzed it himself. Virginia Hughes, a freelance author who has written about her experience with the 23andMe genotyping service. Manish Ponda of Rockefeller University, who has experimented with other -omic type analyses.
Via Lou WoodleyRead the rest
The Ninth Circuit is hearing arguments today about the privacy implications of gathering and retaining "junk" DNA, which has been treated as merely identifying, like a fingerprint, and not unduly invasive. Modern genetics shows that it's possible to extract information about health, ancestry, and other potentially compromising traits. From the Electronic Frontier Foundation's blog:
In this case, Haskell v. Harris, the ACLU of Northern California is challenging the California law, arguing that it violates constitutional guarantees of privacy and freedom from unreasonable search and seizure. This is the first court hearing to address DNA privacy since the research on “junk” DNA has become widely known, and in its role as amicus, EFF asked the court to consider the ground-breaking new research. The oral argument is open to the public at the federal courthouse at 95 7th Street in San Francisco. The hearing starts at 10am, in courtroom 1 on the third floor.
Pictured: Your great-grandchildren?
As a redheaded science journalist, I hear this "fact" a lot. Reality is, though, we aren't going anywhere. Yes, as Cara Santa Maria points out at Huffington Post, redheads represent only about 1% of the world's population. And this hair color is related to a recessive gene. Both your parents have to have a copy in order for you to be a redhead, so a redheaded person can have non-redheaded babies. But that's not the same thing as going extinct. Because here's our little secret: We redheads are stealthily infiltrating the rest of humanity. Only 1% of humans are redheads, but 4% of humans carry a copy of the gene that makes redheads. You could be a carrier and not even know it. So could your spouse. Two redheads are unlikely to make a brunette, but two brunettes can make a redhead. Good luck wiping us out. *Insert evil laughter here*
You can learn more about this at Cara Santa Maria's Talk Nerdy To Me vidcast, but I'll add a little piece of anecdata, too. My parents are both brunettes. So were their parents. I am largely an anomaly on both sides of my family. In fact, besides my brother and I, the only other redhead in my Mom's entire family (that anyone remembers) was her grandfather. And yet still, we rise.
Some more info on how redheads are in yer genome, gingerin' yer descendants from the Stanford University Tech MuseumRead the rest
If you've read anything in the past week about ENCODE—a group of laboratories that recently published their latest work on the human genome—then you need to read John Timmer's excellent piece over at Ars Technica.
What ENCODE has actually done, and why it matters, has been widely misrepresented in the mainstream press—largely because of misleading press releases put out by ENCODE, itself. Timmer sets the record straight. It's a long read, but a fascinating one. Highly recommended.
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This week, the ENCODE project released the results of its latest attempt to catalog all the activities associated with the human genome. Although we've had the sequence of bases that comprise the genome for over a decade, there were still many questions about what a lot of those bases do when inside a cell. ENCODE is a large consortium of labs dedicated to helping sort that out by identifying everything they can about the genome: what proteins stick to it and where, which pieces interact, what bases pick up chemical modifications, and so on. What the studies can't generally do, however, is figure out the biological consequences of these activities, which will require additional work.
Yet the third sentence of the lead ENCODE paper contains an eye-catching figure that ended up being reported widely: "These data enabled us to assign biochemical functions for 80 percent of the genome." Unfortunately, the significance of that statement hinged on a much less widely reported item: the definition of "biochemical function" used by the authors.
This was more than a matter of semantics.