Technology is, in its essence, new ways of thinking. The most powerful type of technology, sometimes called enabling technology, is a thought incarnate which enables new knowledge to find and develop news ways to know. This kind of recursive bootstrapping is how science evolves. As in every type of knowledge, it accrues layers of self-reference to its former state.Link (Thanks, John Brockman)
New informational organizations are layered upon the old without displacement, just as in biological evolution. Our brains are good examples. We retain reptilian reflexes deep in our minds (fight or flight) while the more complex structuring of knowledge (how to do statistics) is layered over those primitive networks. In the same way, older methods of knowing (older scientific methods) are not jettisoned; they are simply subsumed by new levels of order and complexity. But the new tools of observation and measurement, and the new technologies of knowing, will alter the character of science, even while it retains the old methods.
I'm willing to bet the scientific method 400 years from now will differ from today's understanding of science more than today's science method differs from the proto-science used 400 years ago. A sensible forecast of technological innovations in the next 400 years is beyond our imaginations (or at least mine), but we can fruitfully envision technological changes that might occur in the next 50 years.